Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC106928169Innate immunity activator b. (613 aa)    
Predicted Functional Partners:
sgf29
SAGA complex associated factor 29.
    
   0.727
tax1bp3
Tax1 (human T-cell leukemia virus type I) binding protein 3.
    
   0.692
dctn1
Dynactin 1b.
    
  0.650
LOC106933062
Dynactin 1a.
    
  0.650
dctn5
Dynactin 5.
    
   0.598
CYTH3
Cytohesin 3.
    
 
 0.586
cyth1
Cytohesin 1b.
    
 
 0.586
LOC106909539
Cytohesin 2.
    
 
 0.586
LOC106928257
Uncharacterized protein.
    
 
 0.586
LOC106920077
Cytohesin 1a.
    
 
 0.586
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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