ENSPMEP00000001534 protein (Poecilia mexicana)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSPMEP00000001534

G protein-coupled receptor 25; Belongs to the G-protein coupled receptor 1 family. (390 aa)

Predicted Functional Partners:

trappc6a

0.758

creb3l1

0.706

bloc1s3

0.704

tcta

0.699

atp6v1f

0.683

LOC106906414

0.614

exosc2

0.544

PNPT1

0.538

gpr176

0.537

mal2

0.533

Your Current Organism:

Poecilia mexicana

NCBI taxonomy Id: 48701
Other names: shortfin molly

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPMEP00000001534	LOC106906414	ENSPMEP00000001534	ENSPMEP00000029627	G protein-coupled receptor 25; Belongs to the G-protein coupled receptor 1 family.	OCIA domain containing 2.	0.614
ENSPMEP00000001534	PNPT1	ENSPMEP00000001534	ENSPMEP00000022864	G protein-coupled receptor 25; Belongs to the G-protein coupled receptor 1 family.	Polyribonucleotide nucleotidyltransferase 1.	0.538
ENSPMEP00000001534	atp6v1f	ENSPMEP00000001534	ENSPMEP00000026146	G protein-coupled receptor 25; Belongs to the G-protein coupled receptor 1 family.	V-type proton ATPase subunit F; Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	0.683
ENSPMEP00000001534	bloc1s3	ENSPMEP00000001534	ENSPMEP00000029551	G protein-coupled receptor 25; Belongs to the G-protein coupled receptor 1 family.	Biogenesis of lysosome-related organelles complex 1 subunit 3; Component of the BLOC-1 complex, a complex that is required for normal biogenesis of lysosome-related organelles (LRO). Belongs to the BLOC1S3 family.	0.704
ENSPMEP00000001534	creb3l1	ENSPMEP00000001534	ENSPMEP00000019120	G protein-coupled receptor 25; Belongs to the G-protein coupled receptor 1 family.	cAMP responsive element binding protein 3-like 1.	0.706
ENSPMEP00000001534	exosc2	ENSPMEP00000001534	ENSPMEP00000026921	G protein-coupled receptor 25; Belongs to the G-protein coupled receptor 1 family.	Exosome component 2.	0.544
ENSPMEP00000001534	gpr176	ENSPMEP00000001534	ENSPMEP00000028012	G protein-coupled receptor 25; Belongs to the G-protein coupled receptor 1 family.	G protein-coupled receptor 176.	0.537
ENSPMEP00000001534	mal2	ENSPMEP00000001534	ENSPMEP00000015904	G protein-coupled receptor 25; Belongs to the G-protein coupled receptor 1 family.	Mal, T cell differentiation protein 2 (gene/pseudogene).	0.533
ENSPMEP00000001534	tcta	ENSPMEP00000001534	ENSPMEP00000016232	G protein-coupled receptor 25; Belongs to the G-protein coupled receptor 1 family.	T-cell leukemia translocation-altered gene protein homolog.	0.699
ENSPMEP00000001534	trappc6a	ENSPMEP00000001534	ENSPMEP00000013099	G protein-coupled receptor 25; Belongs to the G-protein coupled receptor 1 family.	Trafficking protein particle complex 6b-like.	0.758
LOC106906414	ENSPMEP00000001534	ENSPMEP00000029627	ENSPMEP00000001534	OCIA domain containing 2.	G protein-coupled receptor 25; Belongs to the G-protein coupled receptor 1 family.	0.614
PNPT1	ENSPMEP00000001534	ENSPMEP00000022864	ENSPMEP00000001534	Polyribonucleotide nucleotidyltransferase 1.	G protein-coupled receptor 25; Belongs to the G-protein coupled receptor 1 family.	0.538
PNPT1	exosc2	ENSPMEP00000022864	ENSPMEP00000026921	Polyribonucleotide nucleotidyltransferase 1.	Exosome component 2.	0.472
atp6v1f	ENSPMEP00000001534	ENSPMEP00000026146	ENSPMEP00000001534	V-type proton ATPase subunit F; Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	G protein-coupled receptor 25; Belongs to the G-protein coupled receptor 1 family.	0.683
atp6v1f	bloc1s3	ENSPMEP00000026146	ENSPMEP00000029551	V-type proton ATPase subunit F; Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	Biogenesis of lysosome-related organelles complex 1 subunit 3; Component of the BLOC-1 complex, a complex that is required for normal biogenesis of lysosome-related organelles (LRO). Belongs to the BLOC1S3 family.	0.488
atp6v1f	tcta	ENSPMEP00000026146	ENSPMEP00000016232	V-type proton ATPase subunit F; Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	T-cell leukemia translocation-altered gene protein homolog.	0.686
atp6v1f	trappc6a	ENSPMEP00000026146	ENSPMEP00000013099	V-type proton ATPase subunit F; Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	Trafficking protein particle complex 6b-like.	0.709
bloc1s3	ENSPMEP00000001534	ENSPMEP00000029551	ENSPMEP00000001534	Biogenesis of lysosome-related organelles complex 1 subunit 3; Component of the BLOC-1 complex, a complex that is required for normal biogenesis of lysosome-related organelles (LRO). Belongs to the BLOC1S3 family.	G protein-coupled receptor 25; Belongs to the G-protein coupled receptor 1 family.	0.704
bloc1s3	atp6v1f	ENSPMEP00000029551	ENSPMEP00000026146	Biogenesis of lysosome-related organelles complex 1 subunit 3; Component of the BLOC-1 complex, a complex that is required for normal biogenesis of lysosome-related organelles (LRO). Belongs to the BLOC1S3 family.	V-type proton ATPase subunit F; Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	0.488
bloc1s3	creb3l1	ENSPMEP00000029551	ENSPMEP00000019120	Biogenesis of lysosome-related organelles complex 1 subunit 3; Component of the BLOC-1 complex, a complex that is required for normal biogenesis of lysosome-related organelles (LRO). Belongs to the BLOC1S3 family.	cAMP responsive element binding protein 3-like 1.	0.414