Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSPMEP00000001546Uncharacterized protein. (93 aa)    
Predicted Functional Partners:
fancm
Uncharacterized protein.
    
 0.697
lin52
Lin-52 DREAM MuvB core complex component.
    
 0.621
lin54
Lin-54 DREAM MuvB core complex component.
    
 0.618
lin9
Lin-9 DREAM MuvB core complex component.
    
 0.561
ENSPMEP00000023180
CAF1C_H4-bd domain-containing protein.
    
 0.466
LOC106913905
Retinoblastoma binding protein 4.
    
 0.466
LOC106921954
Retinoblastoma-like 2 (p130).
    
  0.442
rbl1
Retinoblastoma-like 1 (p107).
    
  0.442
tfdp1
Transcription factor.
    
  0.428
med23
Mediator complex subunit 23.
    
  0.428
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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