Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC106924397G protein-coupled receptor 84. (392 aa)    
Predicted Functional Partners:
ush1c
Usher syndrome 1C.
    
 
 0.719
irx3
Iroquois homeobox 3a.
      
 0.689
sall4
Spalt-like transcription factor 4.
      
 0.681
selenos
Selenoprotein S.
      
 0.652
GPR119
G protein-coupled receptor 119; Belongs to the G-protein coupled receptor 1 family.
      
 0.649
LOC106910184
Usher syndrome 2A (autosomal recessive, mild).
      
 0.647
adamts16
ADAM metallopeptidase with thrombospondin type 1 motif, 16.
      
 0.635
adamts18
ADAM metallopeptidase with thrombospondin type 1 motif, 18.
      
 0.635
arid4a
AT rich interactive domain 4A (RBP1-like).
      
 0.625
arid4b
Translocase of outer mitochondrial membrane 20.
      
 0.625
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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