Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dexiDexi homolog (mouse). (89 aa)    
Predicted Functional Partners:
clec16a
C-type lectin domain containing 16A.
      
 0.752
trappc13
Trafficking protein particle complex 13.
      
 0.707
ENSPMEP00000019310
Mitochondrial ribosomal protein S28.
      
 0.705
trmt9b
tRNA methyltransferase 9B.
      
 0.703
LOC106907615
WAS/WASL interacting protein family, member 2b.
      
 0.703
mrpl45
Mitochondrial ribosomal protein L45.
      
 0.696
mcfd2
Multiple coagulation factor deficiency 2.
      
 0.692
LOC106925090
Si:ch211-161c3.5.
      
 0.691
LOC106915930
SPT20 homolog, SAGA complex component.
      
 0.687
ENSPMEP00000034897
Uncharacterized protein.
      
 0.651
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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