STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106908969Uncharacterized protein. (476 aa)    
Predicted Functional Partners:
mtm1
Myotubularin 1.
   
0.781
mtmr2
Myotubularin related protein 2.
   
0.781
LOC106917253
Myotubularin related protein 1a.
   
0.781
rab21
RAB21, member RAS oncogene family.
    
 0.761
MTMR4
Myotubularin related protein 4.
    
0.731
mtmr3
Myotubularin related protein 3.
    
0.731
FIG4
FIG4 phosphoinositide 5-phosphatase.
     
 0.703
dipk2a
Divergent protein kinase domain 2Ab.
     
 0.614
LOC106918553
Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.
     
 0.606
pik3c3
Phosphatidylinositol 3-kinase catalytic subunit type 3.
     
 0.592
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.