Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ssu72SSU72 homolog, RNA polymerase II CTD phosphatase. (194 aa)    
Predicted Functional Partners:
WDR33
WD repeat domain 33.
    
 0.987
cpsf4
Cleavage and polyadenylation specific factor 4.
   
 0.983
cpsf2
Cleavage and polyadenylation specificity factor subunit 2.
   
 0.977
twf2
WD repeat domain 82.
   
 0.971
polr2a
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.968
LOC106918697
FIP1 like 1b (S. cerevisiae).
    
 0.966
gtf2b
General transcription factor IIB.
   
 0.961
cpsf3
Cleavage and polyadenylation specific factor 3.
   
 0.951
sympk
Symplekin.
   
 
 0.949
ENSPMEP00000032006
Uncharacterized protein.
    
 0.949
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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