Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC106905380XK-related protein. (394 aa)    
Predicted Functional Partners:
CASP3
Caspase 3; Belongs to the peptidase C14A family.
    
  0.907
LOC106906082
Caspase 3, apoptosis-related cysteine peptidase a; Belongs to the peptidase C14A family.
    
  0.907
bsg
Basigin.
     
  0.900
ENSPMEP00000000153
LRAT domain containing 1.
      
 0.894
matk
Tyrosine-protein kinase.
      
 0.688
n6amt1
N-6 adenine-specific DNA methyltransferase 1.
      
 0.600
rb1
Retinoblastoma 1.
      
 0.474
ENSPMEP00000012571
Uncharacterized protein.
      
 0.416
tmem68
Transmembrane protein 68.
      
 0.416
hspb8
Heat shock protein b8; Belongs to the small heat shock protein (HSP20) family.
      
 0.414
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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