Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSPMEP00000001665PWI domain-containing protein. (79 aa)    
Predicted Functional Partners:
LOC106923666
Serine/arginine repetitive matrix 2.
   
 0.973
LOC106922441
RNA binding motif protein 25a.
   
 0.965
LOC106926829
RNA binding motif protein 25b.
   
 0.965
LOC106932530
RNA binding motif protein 25b.
   
 0.965
rnps1
RNA binding protein S1, serine-rich domain.
   
 0.964
alyref
Aly/REF export factor.
   
 0.958
eif4a3
Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.
    
 0.940
UPF2
UPF2 regulator of nonsense mediated mRNA decay.
    
 
 0.922
upf3b
UPF3B regulator of nonsense mediated mRNA decay.
    
 0.921
upf3a
UPF3A regulator of nonsense mediated mRNA decay.
    
 0.921
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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