LOC106906131 protein (Poecilia mexicana) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC106906131

Glycine receptor, alpha 4b; Belongs to the ligand-gated ion channel (TC 1.A.9) family. (459 aa)

Predicted Functional Partners:

GLRB

0.769

LOC106924933

0.769

LOC106910619

0.636

gphn

0.636

kctd2

0.470

HTR1F

0.439

fbxo31

0.404

LOC106928385

0.401

LOC106922167

0.401

LOC106919469

0.401

Your Current Organism:

Poecilia mexicana

NCBI taxonomy Id: 48701
Other names: shortfin molly

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GLRB	LOC106906131	ENSPMEP00000011912	ENSPMEP00000001677	Glycine receptor beta; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Glycine receptor, alpha 4b; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.769
GLRB	LOC106910619	ENSPMEP00000011912	ENSPMEP00000003643	Glycine receptor beta; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Molybdopterin molybdenumtransferase; Catalyzes two steps in the biosynthesis of the molybdenum cofactor. In the first step, molybdopterin is adenylated. Subsequently, molybdate is inserted into adenylated molybdopterin and AMP is released.	0.931
GLRB	gphn	ENSPMEP00000011912	ENSPMEP00000011046	Glycine receptor beta; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Molybdopterin molybdenumtransferase; Catalyzes two steps in the biosynthesis of the molybdenum cofactor. In the first step, molybdopterin is adenylated. Subsequently, molybdate is inserted into adenylated molybdopterin and AMP is released.	0.931
HTR1F	LOC106906131	ENSPMEP00000001865	ENSPMEP00000001677	5-hydroxytryptamine receptor 1F.	Glycine receptor, alpha 4b; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.439
LOC106906131	GLRB	ENSPMEP00000001677	ENSPMEP00000011912	Glycine receptor, alpha 4b; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Glycine receptor beta; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.769
LOC106906131	HTR1F	ENSPMEP00000001677	ENSPMEP00000001865	Glycine receptor, alpha 4b; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	5-hydroxytryptamine receptor 1F.	0.439
LOC106906131	LOC106910619	ENSPMEP00000001677	ENSPMEP00000003643	Glycine receptor, alpha 4b; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Molybdopterin molybdenumtransferase; Catalyzes two steps in the biosynthesis of the molybdenum cofactor. In the first step, molybdopterin is adenylated. Subsequently, molybdate is inserted into adenylated molybdopterin and AMP is released.	0.636
LOC106906131	LOC106919469	ENSPMEP00000001677	ENSPMEP00000028547	Glycine receptor, alpha 4b; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Proteolipid protein 1a.	0.401
LOC106906131	LOC106922167	ENSPMEP00000001677	ENSPMEP00000000582	Glycine receptor, alpha 4b; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Proteolipid protein 1b.	0.401
LOC106906131	LOC106924933	ENSPMEP00000001677	ENSPMEP00000026783	Glycine receptor, alpha 4b; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Glycine receptor, beta a; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.769
LOC106906131	LOC106928385	ENSPMEP00000001677	ENSPMEP00000000070	Glycine receptor, alpha 4b; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Proteolipid protein 1a.	0.401
LOC106906131	fbxo31	ENSPMEP00000001677	ENSPMEP00000005031	Glycine receptor, alpha 4b; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	F-box protein 31.	0.404
LOC106906131	gphn	ENSPMEP00000001677	ENSPMEP00000011046	Glycine receptor, alpha 4b; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Molybdopterin molybdenumtransferase; Catalyzes two steps in the biosynthesis of the molybdenum cofactor. In the first step, molybdopterin is adenylated. Subsequently, molybdate is inserted into adenylated molybdopterin and AMP is released.	0.636
LOC106906131	kctd2	ENSPMEP00000001677	ENSPMEP00000018374	Glycine receptor, alpha 4b; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Potassium channel tetramerization domain containing 2.	0.470
LOC106910619	GLRB	ENSPMEP00000003643	ENSPMEP00000011912	Molybdopterin molybdenumtransferase; Catalyzes two steps in the biosynthesis of the molybdenum cofactor. In the first step, molybdopterin is adenylated. Subsequently, molybdate is inserted into adenylated molybdopterin and AMP is released.	Glycine receptor beta; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.931
LOC106910619	LOC106906131	ENSPMEP00000003643	ENSPMEP00000001677	Molybdopterin molybdenumtransferase; Catalyzes two steps in the biosynthesis of the molybdenum cofactor. In the first step, molybdopterin is adenylated. Subsequently, molybdate is inserted into adenylated molybdopterin and AMP is released.	Glycine receptor, alpha 4b; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.636
LOC106910619	LOC106924933	ENSPMEP00000003643	ENSPMEP00000026783	Molybdopterin molybdenumtransferase; Catalyzes two steps in the biosynthesis of the molybdenum cofactor. In the first step, molybdopterin is adenylated. Subsequently, molybdate is inserted into adenylated molybdopterin and AMP is released.	Glycine receptor, beta a; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.931
LOC106910619	gphn	ENSPMEP00000003643	ENSPMEP00000011046	Molybdopterin molybdenumtransferase; Catalyzes two steps in the biosynthesis of the molybdenum cofactor. In the first step, molybdopterin is adenylated. Subsequently, molybdate is inserted into adenylated molybdopterin and AMP is released.	Molybdopterin molybdenumtransferase; Catalyzes two steps in the biosynthesis of the molybdenum cofactor. In the first step, molybdopterin is adenylated. Subsequently, molybdate is inserted into adenylated molybdopterin and AMP is released.	0.900
LOC106919469	LOC106906131	ENSPMEP00000028547	ENSPMEP00000001677	Proteolipid protein 1a.	Glycine receptor, alpha 4b; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.401
LOC106922167	LOC106906131	ENSPMEP00000000582	ENSPMEP00000001677	Proteolipid protein 1b.	Glycine receptor, alpha 4b; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.401