Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC106932296Si:dkey-28n18.9. (370 aa)    
Predicted Functional Partners:
snx6
Sorting nexin; Involved in several stages of intracellular trafficking.
     
 
0.900
snx5
Sorting nexin; Involved in several stages of intracellular trafficking.
     
 
0.900
vps29
Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.
    
 
 0.761
SNX7
Sorting nexin 7.
   
 0.732
ENSPMEP00000003031
Uncharacterized protein.
   
 0.732
ENSPMEP00000006494
PX domain-containing protein.
   
 0.732
LOC106911220
PX domain-containing protein.
   
 0.732
snx30
Sorting nexin family member 30.
   
 0.732
snx2
Sorting nexin 2.
   
 0.732
LOC106907823
Uncharacterized protein.
   
 0.732
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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