Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC106904558TUB like protein 4b; Belongs to the TUB family. (1827 aa)    
Predicted Functional Partners:
cul5
Cullin 5; Belongs to the cullin family.
    
  0.864
CUL5
Cullin 5; Belongs to the cullin family.
    
  0.864
rnf7
Ring finger protein 7.
    
  0.849
LOC106929611
Elongin B.
    
  0.715
ELOB
Elongin B.
    
  0.715
ENSPMEP00000030950
Potassium voltage-gated channel, Isk-related family, member 4.
      
 0.702
rbx1
Ring-box 1, E3 ubiquitin protein ligase.
    
  0.695
serac1
Serine active site containing 1.
      
 0.691
tmem242
Transmembrane protein 242.
      
 0.687
gtf2h5
General transcription factor IIH, polypeptide 5.
      
 0.671
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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