STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106904558TUB like protein 4b; Belongs to the TUB family. (1827 aa)    
Predicted Functional Partners:
cul5
Cullin 5; Belongs to the cullin family.
    
 0.718
CUL5
Cullin 5; Belongs to the cullin family.
    
 0.718
rnf7
Ring finger protein 7.
    
  0.655
LOC106929611
Elongin B.
    
  0.637
rbx1
Ring-box 1, E3 ubiquitin protein ligase.
    
  0.637
ELOB
Elongin B.
    
  0.637
cand1
Cullin-associated and neddylation-dissociated 1.
   
 
  0.618
LOC106923340
TIP120 domain-containing protein.
   
 
  0.618
cops5
COP9 signalosome subunit 5.
   
 
  0.587
socs5
Suppressor of cytokine signaling 5b.
   
 
  0.554
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.