LOC106906125 protein (Poecilia mexicana) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC106906125

Uncharacterized protein. (441 aa)

Predicted Functional Partners:

LOC106903391

0.772

sema3e

0.736

hhip

0.699

gipc1

0.672

tfap2b

0.665

ENSPMEP00000029790

0.649

sema3c

0.620

ENSPMEP00000023098

0.607

sema3b

0.596

tie1

0.576

Your Current Organism:

Poecilia mexicana

NCBI taxonomy Id: 48701
Other names: shortfin molly

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPMEP00000023098	LOC106903391	ENSPMEP00000023098	ENSPMEP00000027985	Vascular endothelial growth factor c; Belongs to the PDGF/VEGF growth factor family.	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	0.992
ENSPMEP00000023098	LOC106906125	ENSPMEP00000023098	ENSPMEP00000001709	Vascular endothelial growth factor c; Belongs to the PDGF/VEGF growth factor family.	Uncharacterized protein.	0.607
ENSPMEP00000023098	sema3c	ENSPMEP00000023098	ENSPMEP00000010372	Vascular endothelial growth factor c; Belongs to the PDGF/VEGF growth factor family.	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C; Belongs to the semaphorin family.	0.565
ENSPMEP00000023098	tie1	ENSPMEP00000023098	ENSPMEP00000001505	Vascular endothelial growth factor c; Belongs to the PDGF/VEGF growth factor family.	Tyrosine kinase with immunoglobulin-like and EGF-like domains 1.	0.678
ENSPMEP00000029790	LOC106906125	ENSPMEP00000029790	ENSPMEP00000001709	Amnion associated transmembrane protein.	Uncharacterized protein.	0.649
LOC106903391	ENSPMEP00000023098	ENSPMEP00000027985	ENSPMEP00000023098	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	Vascular endothelial growth factor c; Belongs to the PDGF/VEGF growth factor family.	0.992
LOC106903391	LOC106906125	ENSPMEP00000027985	ENSPMEP00000001709	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	Uncharacterized protein.	0.772
LOC106906125	ENSPMEP00000023098	ENSPMEP00000001709	ENSPMEP00000023098	Uncharacterized protein.	Vascular endothelial growth factor c; Belongs to the PDGF/VEGF growth factor family.	0.607
LOC106906125	ENSPMEP00000029790	ENSPMEP00000001709	ENSPMEP00000029790	Uncharacterized protein.	Amnion associated transmembrane protein.	0.649
LOC106906125	LOC106903391	ENSPMEP00000001709	ENSPMEP00000027985	Uncharacterized protein.	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	0.772
LOC106906125	gipc1	ENSPMEP00000001709	ENSPMEP00000017834	Uncharacterized protein.	GIPC PDZ domain containing family, member 1.	0.672
LOC106906125	hhip	ENSPMEP00000001709	ENSPMEP00000016851	Uncharacterized protein.	Hedgehog interacting protein.	0.699
LOC106906125	sema3b	ENSPMEP00000001709	ENSPMEP00000033041	Uncharacterized protein.	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B; Belongs to the semaphorin family.	0.596
LOC106906125	sema3c	ENSPMEP00000001709	ENSPMEP00000010372	Uncharacterized protein.	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C; Belongs to the semaphorin family.	0.620
LOC106906125	sema3e	ENSPMEP00000001709	ENSPMEP00000000225	Uncharacterized protein.	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E; Belongs to the semaphorin family.	0.736
LOC106906125	tfap2b	ENSPMEP00000001709	ENSPMEP00000008373	Uncharacterized protein.	Transcription factor AP-2 beta.	0.665
LOC106906125	tie1	ENSPMEP00000001709	ENSPMEP00000001505	Uncharacterized protein.	Tyrosine kinase with immunoglobulin-like and EGF-like domains 1.	0.576
gipc1	LOC106906125	ENSPMEP00000017834	ENSPMEP00000001709	GIPC PDZ domain containing family, member 1.	Uncharacterized protein.	0.672
hhip	LOC106906125	ENSPMEP00000016851	ENSPMEP00000001709	Hedgehog interacting protein.	Uncharacterized protein.	0.699
hhip	tfap2b	ENSPMEP00000016851	ENSPMEP00000008373	Hedgehog interacting protein.	Transcription factor AP-2 beta.	0.724