STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106908957Uncharacterized protein. (531 aa)    
Predicted Functional Partners:
LOC106908563
Uncharacterized protein.
   
  0.938
cdc5l
CDC5 cell division cycle 5-like (S. pombe).
   
 
 0.907
LOC106922441
RNA binding motif protein 25a.
   
 0.886
LOC106926829
RNA binding motif protein 25b.
   
 0.886
LOC106932530
RNA binding motif protein 25b.
   
0.886
sf3b1
Splicing factor 3b, subunit 1.
   
 
 0.881
luc7l3
Uncharacterized protein.
   
 0.858
u2af2
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 
0.856
LOC106927112
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 
0.856
prpf40a
PRP40 pre-mRNA processing factor 40 homolog A.
   
  0.841
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.