LOC106908957 protein (Poecilia mexicana) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

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textmining

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co-expression

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[Homology]

Score

LOC106908957

Uncharacterized protein. (531 aa)

Predicted Functional Partners:

LOC106908563

0.977

sf1

0.973

LOC106922441

0.971

LOC106926829

0.971

LOC106932530

0.971

sf3b1

0.970

prpf40a

0.970

sap18

0.953

cdc40

0.915

luc7l3

0.912

Your Current Organism:

Poecilia mexicana

NCBI taxonomy Id: 48701
Other names: shortfin molly

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106908563	LOC106908957	ENSPMEP00000015127	ENSPMEP00000001757	Uncharacterized protein.	Uncharacterized protein.	0.977
LOC106908563	LOC106922441	ENSPMEP00000015127	ENSPMEP00000020893	Uncharacterized protein.	RNA binding motif protein 25a.	0.768
LOC106908563	LOC106926829	ENSPMEP00000015127	ENSPMEP00000027675	Uncharacterized protein.	RNA binding motif protein 25b.	0.768
LOC106908563	LOC106932530	ENSPMEP00000015127	ENSPMEP00000031755	Uncharacterized protein.	RNA binding motif protein 25b.	0.768
LOC106908563	luc7l3	ENSPMEP00000015127	ENSPMEP00000016441	Uncharacterized protein.	Uncharacterized protein.	0.416
LOC106908563	sf3b1	ENSPMEP00000015127	ENSPMEP00000018068	Uncharacterized protein.	Splicing factor 3b, subunit 1.	0.955
LOC106908957	LOC106908563	ENSPMEP00000001757	ENSPMEP00000015127	Uncharacterized protein.	Uncharacterized protein.	0.977
LOC106908957	LOC106922441	ENSPMEP00000001757	ENSPMEP00000020893	Uncharacterized protein.	RNA binding motif protein 25a.	0.971
LOC106908957	LOC106926829	ENSPMEP00000001757	ENSPMEP00000027675	Uncharacterized protein.	RNA binding motif protein 25b.	0.971
LOC106908957	LOC106932530	ENSPMEP00000001757	ENSPMEP00000031755	Uncharacterized protein.	RNA binding motif protein 25b.	0.971
LOC106908957	cdc40	ENSPMEP00000001757	ENSPMEP00000029162	Uncharacterized protein.	Cell division cycle 40 homolog (S. cerevisiae).	0.915
LOC106908957	luc7l3	ENSPMEP00000001757	ENSPMEP00000016441	Uncharacterized protein.	Uncharacterized protein.	0.912
LOC106908957	prpf40a	ENSPMEP00000001757	ENSPMEP00000019181	Uncharacterized protein.	PRP40 pre-mRNA processing factor 40 homolog A.	0.970
LOC106908957	sap18	ENSPMEP00000001757	ENSPMEP00000012349	Uncharacterized protein.	Histone deacetylase complex subunit SAP18; Involved in the tethering of the SIN3 complex to core histone proteins.	0.953
LOC106908957	sf1	ENSPMEP00000001757	ENSPMEP00000004474	Uncharacterized protein.	Splicing factor 1.	0.973
LOC106908957	sf3b1	ENSPMEP00000001757	ENSPMEP00000018068	Uncharacterized protein.	Splicing factor 3b, subunit 1.	0.970
LOC106922441	LOC106908563	ENSPMEP00000020893	ENSPMEP00000015127	RNA binding motif protein 25a.	Uncharacterized protein.	0.768
LOC106922441	LOC106908957	ENSPMEP00000020893	ENSPMEP00000001757	RNA binding motif protein 25a.	Uncharacterized protein.	0.971
LOC106922441	LOC106932530	ENSPMEP00000020893	ENSPMEP00000031755	RNA binding motif protein 25a.	RNA binding motif protein 25b.	0.901
LOC106922441	cdc40	ENSPMEP00000020893	ENSPMEP00000029162	RNA binding motif protein 25a.	Cell division cycle 40 homolog (S. cerevisiae).	0.643