Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
trim13Tripartite motif containing 13. (434 aa)    
Predicted Functional Partners:
spryd7
SPRY domain containing 7b.
    
 
 0.699
ENSPMEP00000027846
Uncharacterized protein.
    
 0.666
trim23
Tripartite motif containing 23.
    
 0.647
zdhhc22
Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.
    
   0.570
trim32
Tripartite motif containing 32.
    
 0.561
ENSPMEP00000027048
RING-type domain-containing protein.
    
 
 0.548
LOC106919486
FinTRIM family, member 83.
      
 0.540
trim44
Tripartite motif containing 44.
    
 
 0.533
rps27a
Ribosomal protein S27a.
    
  0.523
LOC106919484
FinTRIM family, member 82.
      
 0.517
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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