sync protein (Poecilia mexicana) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

sync

Uncharacterized protein. (690 aa)

Predicted Functional Partners:

prph

0.607

mst1r

0.593

met

0.593

LOC106916334

0.593

znf644

0.581

LOC106916918

0.576

LOC106922320

0.551

LOC106926978

0.548

arid4a

0.544

arid4b

0.544

Your Current Organism:

Poecilia mexicana

NCBI taxonomy Id: 48701
Other names: shortfin molly

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106916334	LOC106916918	ENSPMEP00000025677	ENSPMEP00000007966	Macrophage stimulating 1 receptor a.	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	0.593
LOC106916334	LOC106922320	ENSPMEP00000025677	ENSPMEP00000020969	Macrophage stimulating 1 receptor a.	Ig-like domain-containing protein.	0.403
LOC106916334	LOC106926978	ENSPMEP00000025677	ENSPMEP00000005251	Macrophage stimulating 1 receptor a.	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	0.593
LOC106916334	met	ENSPMEP00000025677	ENSPMEP00000013002	Macrophage stimulating 1 receptor a.	MET proto-oncogene, receptor tyrosine kinase.	0.757
LOC106916334	mst1r	ENSPMEP00000025677	ENSPMEP00000012956	Macrophage stimulating 1 receptor a.	Macrophage stimulating 1 receptor b.	0.762
LOC106916334	sync	ENSPMEP00000025677	ENSPMEP00000001789	Macrophage stimulating 1 receptor a.	Uncharacterized protein.	0.593
LOC106916918	LOC106916334	ENSPMEP00000007966	ENSPMEP00000025677	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	Macrophage stimulating 1 receptor a.	0.593
LOC106916918	LOC106926978	ENSPMEP00000007966	ENSPMEP00000005251	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	0.741
LOC106916918	arid4a	ENSPMEP00000007966	ENSPMEP00000008819	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	AT rich interactive domain 4A (RBP1-like).	0.544
LOC106916918	arid4b	ENSPMEP00000007966	ENSPMEP00000022284	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	Translocase of outer mitochondrial membrane 20.	0.544
LOC106916918	met	ENSPMEP00000007966	ENSPMEP00000013002	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	MET proto-oncogene, receptor tyrosine kinase.	0.593
LOC106916918	mst1r	ENSPMEP00000007966	ENSPMEP00000012956	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	Macrophage stimulating 1 receptor b.	0.593
LOC106916918	sync	ENSPMEP00000007966	ENSPMEP00000001789	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	Uncharacterized protein.	0.576
LOC106922320	LOC106916334	ENSPMEP00000020969	ENSPMEP00000025677	Ig-like domain-containing protein.	Macrophage stimulating 1 receptor a.	0.403
LOC106922320	met	ENSPMEP00000020969	ENSPMEP00000013002	Ig-like domain-containing protein.	MET proto-oncogene, receptor tyrosine kinase.	0.403
LOC106922320	mst1r	ENSPMEP00000020969	ENSPMEP00000012956	Ig-like domain-containing protein.	Macrophage stimulating 1 receptor b.	0.403
LOC106922320	sync	ENSPMEP00000020969	ENSPMEP00000001789	Ig-like domain-containing protein.	Uncharacterized protein.	0.551
LOC106926978	LOC106916334	ENSPMEP00000005251	ENSPMEP00000025677	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	Macrophage stimulating 1 receptor a.	0.593
LOC106926978	LOC106916918	ENSPMEP00000005251	ENSPMEP00000007966	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	0.741
LOC106926978	arid4a	ENSPMEP00000005251	ENSPMEP00000008819	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	AT rich interactive domain 4A (RBP1-like).	0.544