Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ENSPMEP00000001798SynN domain-containing protein. (287 aa)    
Predicted Functional Partners:
vti1b
Vesicle transport through interaction with t-SNAREs 1B.
   
 0.973
stx5
Syntaxin 5A; Belongs to the syntaxin family.
    
 0.971
vti1a
Vesicle transport through interaction with t-SNAREs 1A.
   
 0.971
vamp7
Synaptobrevin-like 1; Belongs to the synaptobrevin family.
   
 0.967
gosr2
Golgi SNAP receptor complex member 2; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.
    
 0.967
stx8
Syntaxin 8.
   
 0.965
snap29
Synaptosome associated protein 29.
    
 0.959
snap47
Synaptosome associated protein 47.
    
 0.958
napg
N-ethylmaleimide-sensitive factor attachment protein, gamma b.
   
 0.956
ykt6
YKT6 v-SNARE homolog (S. cerevisiae); Belongs to the synaptobrevin family.
   
 0.955
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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