Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSPMEP00000001852Uncharacterized protein. (90 aa)    
Predicted Functional Partners:
ints3
Integrator complex subunit 3.
    
 
 0.971
LOC106911190
Nucleic acid binding protein 1a.
    
 0.930
LOC106930587
SOSS complex subunit B2-like.
    
 
 0.854
ints2
Integrator complex subunit 2.
    
 
 0.851
ints1
Integrator complex subunit 1.
    
 
 0.817
ints7
Integrator complex subunit 7.
    
 
 0.805
ints5
Integrator complex subunit 5.
    
 
 0.791
ints10
Integrator complex subunit 10.
    
 
 0.773
ints4
Integrator complex subunit 4.
    
 
 0.772
ints9
Integrator complex subunit 9.
    
 
 0.769
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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