Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC106915595Tetratricopeptide repeat domain 23. (454 aa)    
Predicted Functional Partners:
iqce
Uncharacterized protein.
    
 
 0.947
efcab7
EF-hand calcium binding domain 7.
    
 
 0.925
fam92a
Family with sequence similarity 92 member A1.
      
 0.724
txndc15
Thioredoxin domain containing 15.
      
 0.711
LOC106915603
Pyroglutamyl-peptidase I like.
      
 0.687
dph1
2-(3-amino-3-carboxypropyl)histidine synthase subunit 1; Required for the first step of diphthamide biosynthesis, the transfer of 3-amino-3-carboxypropyl from S-adenosyl-L-methionine to a histidine residue. Diphthamide is a post-translational modification of histidine which occurs in elongation factor 2.
      
 0.677
ints10
Integrator complex subunit 10.
      
 0.668
LOC106920228
Si:dkey-191g9.5.
      
 0.644
ENSPMEP00000004653
Armadillo repeat containing 9.
      
 0.578
sage1
Integrator complex subunit 6 like.
      
 0.567
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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