STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDRGK1DDRGK domain containing 1. (293 aa)    
Predicted Functional Partners:
cdk5rap3
CDK5 regulatory subunit associated protein 3.
    
 
 0.962
ufl1
UFM1-specific ligase 1.
    
 
 0.946
UFC1
Ubiquitin-fold modifier-conjugating enzyme 1; E2-like enzyme which forms an intermediate with UFM1 via a thioester linkage.
    
 
 0.809
ufm1
Ubiquitin-fold modifier 1; Ubiquitin-like modifier which can be covalently attached to substrate proteins as a monomer or a lysine-linked polymer in a post- translational process called ufmylation. Ufmylation on lysine residues of proteins may play a crucial role in a number of cellular processes.
    
 
 0.715
ufsp2
Ufm1-specific peptidase 2.
    
 
 0.652
lman1
Lectin, mannose-binding, 1.
    
  0.648
tm7sf2
Transmembrane 7 superfamily member 2.
    
  0.639
dhcr7
7-dehydrocholesterol reductase.
    
  0.615
srpra
SRP receptor subunit alpha.
    
 
 0.614
thnsl2
Threonine synthase-like 2.
      
 0.602
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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