Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC106915884PDZ domain containing 4. (659 aa)    
Predicted Functional Partners:
apip
Methylthioribulose-1-phosphate dehydratase; Catalyzes the dehydration of methylthioribulose-1-phosphate (MTRu-1-P) into 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P). Functions in the methionine salvage pathway. May play a role in apoptosis.
    
   0.765
LOC106915352
Centrosomal protein 131.
    
 
 0.720
cdkl1
Cyclin-dependent kinase-like 1 (CDC2-related kinase); Belongs to the protein kinase superfamily.
      
 0.627
ENSPMEP00000023377
MARVEL domain containing 1.
      
 0.562
taf3
TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated facto.
   
    0.561
ENSPMEP00000010937
Actinin alpha 3b.
    
   0.517
ACTN4
Actinin alpha 4.
    
   0.517
actn1
Actinin, alpha 1.
    
   0.517
LOC106906181
Actinin, alpha 2b.
    
   0.517
ENSPMEP00000010301
Pipecolic acid oxidase.
      
 0.488
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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