ENSPMEP00000001920 protein (Poecilia mexicana)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSPMEP00000001920

Uncharacterized protein. (54 aa)

Predicted Functional Partners:

myog

0.858

ctnnb1

0.850

ENSPMEP00000012821

0.832

ENSPMEP00000013137

0.832

ENSPMEP00000002928

0.823

LOC106925673

0.823

LOC106929909

0.818

ENSPMEP00000027311

0.812

myf6

0.808

LOC106925573

0.804

Your Current Organism:

Poecilia mexicana

NCBI taxonomy Id: 48701
Other names: shortfin molly

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPMEP00000001920	ENSPMEP00000002928	ENSPMEP00000001920	ENSPMEP00000002928	Uncharacterized protein.	BHLH domain-containing protein.	0.823
ENSPMEP00000001920	ENSPMEP00000012821	ENSPMEP00000001920	ENSPMEP00000012821	Uncharacterized protein.	Achaete-scute family bHLH transcription factor 1b.	0.832
ENSPMEP00000001920	ENSPMEP00000013137	ENSPMEP00000001920	ENSPMEP00000013137	Uncharacterized protein.	Achaete-scute family bHLH transcription factor 1a.	0.832
ENSPMEP00000001920	ENSPMEP00000027311	ENSPMEP00000001920	ENSPMEP00000027311	Uncharacterized protein.	Inhibitor of DNA binding 1, HLH protein.	0.812
ENSPMEP00000001920	LOC106925573	ENSPMEP00000001920	ENSPMEP00000009582	Uncharacterized protein.	Myogenic factor.	0.804
ENSPMEP00000001920	LOC106925673	ENSPMEP00000001920	ENSPMEP00000025575	Uncharacterized protein.	T-cell acute lymphocytic leukemia 1.	0.823
ENSPMEP00000001920	LOC106929909	ENSPMEP00000001920	ENSPMEP00000014203	Uncharacterized protein.	Inhibitor of DNA binding 3.	0.818
ENSPMEP00000001920	ctnnb1	ENSPMEP00000001920	ENSPMEP00000002621	Uncharacterized protein.	Catenin (cadherin-associated protein), beta 1.	0.850
ENSPMEP00000001920	myf6	ENSPMEP00000001920	ENSPMEP00000032051	Uncharacterized protein.	Myogenic factor 6.	0.808
ENSPMEP00000001920	myog	ENSPMEP00000001920	ENSPMEP00000016535	Uncharacterized protein.	Myogenin.	0.858
ENSPMEP00000002928	ENSPMEP00000001920	ENSPMEP00000002928	ENSPMEP00000001920	BHLH domain-containing protein.	Uncharacterized protein.	0.823
ENSPMEP00000012821	ENSPMEP00000001920	ENSPMEP00000012821	ENSPMEP00000001920	Achaete-scute family bHLH transcription factor 1b.	Uncharacterized protein.	0.832
ENSPMEP00000013137	ENSPMEP00000001920	ENSPMEP00000013137	ENSPMEP00000001920	Achaete-scute family bHLH transcription factor 1a.	Uncharacterized protein.	0.832
ENSPMEP00000013137	ENSPMEP00000027311	ENSPMEP00000013137	ENSPMEP00000027311	Achaete-scute family bHLH transcription factor 1a.	Inhibitor of DNA binding 1, HLH protein.	0.410
ENSPMEP00000027311	ENSPMEP00000001920	ENSPMEP00000027311	ENSPMEP00000001920	Inhibitor of DNA binding 1, HLH protein.	Uncharacterized protein.	0.812
ENSPMEP00000027311	ENSPMEP00000013137	ENSPMEP00000027311	ENSPMEP00000013137	Inhibitor of DNA binding 1, HLH protein.	Achaete-scute family bHLH transcription factor 1a.	0.410
ENSPMEP00000027311	LOC106925573	ENSPMEP00000027311	ENSPMEP00000009582	Inhibitor of DNA binding 1, HLH protein.	Myogenic factor.	0.839
ENSPMEP00000027311	LOC106929909	ENSPMEP00000027311	ENSPMEP00000014203	Inhibitor of DNA binding 1, HLH protein.	Inhibitor of DNA binding 3.	0.802
ENSPMEP00000027311	myog	ENSPMEP00000027311	ENSPMEP00000016535	Inhibitor of DNA binding 1, HLH protein.	Myogenin.	0.830
LOC106925573	ENSPMEP00000001920	ENSPMEP00000009582	ENSPMEP00000001920	Myogenic factor.	Uncharacterized protein.	0.804