Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ENSPMEP00000001928RabBD domain-containing protein. (131 aa)    
Predicted Functional Partners:
RAB27B
RAB27B, member RAS oncogene family.
    
 0.824
LOC106922673
Uncharacterized protein.
    
 0.824
rab27a
RAB27A, member RAS oncogene family.
    
 0.824
LOC106908177
Synaptotagmin-like 2b.
     
 0.654
sytl1
Synaptotagmin-like 1.
     
 0.654
ENSPMEP00000005512
Rab_eff_C domain-containing protein.
 
      0.637
LOC106919882
Cell adhesion molecule 2b.
   
  
 0.574
LOC106921101
Cell adhesion molecule 2a.
   
  
 0.574
LOC106933642
Bicaudal C homolog 2.
      
 0.568
bicc1
BicC family RNA binding protein 1a.
      
 0.568
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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