Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC106918454SRY-box transcription factor 1a. (344 aa)    
Predicted Functional Partners:
LOC106918318
POU domain protein.
    
 0.932
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 0.813
sall4
Spalt-like transcription factor 4.
   
 0.813
prdm14
PR domain containing 14.
    
 0.702
lin28a
CCHC-type domain-containing protein.
    
 0.641
LOC106921026
Uncharacterized protein.
    
 0.618
LOC106931515
Junction plakoglobin a.
    
 0.618
nr5a2
Nuclear receptor subfamily 5, group A, member 2.
    
 0.618
nr5a1
Nuclear receptor subfamily 5, group A, member 1a.
    
 0.618
ENSPMEP00000002113
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
     
 0.617
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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