LOC106908941 protein (Poecilia mexicana) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC106908941

Plexin C1. (594 aa)

Predicted Functional Partners:

nrp1

0.873

sema3e

0.822

SEMA4D

0.790

LOC106920154

0.784

ENSPMEP00000018443

0.784

sema7a

0.784

met

0.775

sema3b

0.751

sema3a

0.736

LOC106915081

0.736

Your Current Organism:

Poecilia mexicana

NCBI taxonomy Id: 48701
Other names: shortfin molly

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPMEP00000018443	LOC106908941	ENSPMEP00000018443	ENSPMEP00000001936	Sema domain-containing protein.	Plexin C1.	0.784
ENSPMEP00000018443	LOC106915081	ENSPMEP00000018443	ENSPMEP00000024361	Sema domain-containing protein.	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Aa; Belongs to the semaphorin family.	0.600
ENSPMEP00000018443	LOC106920154	ENSPMEP00000018443	ENSPMEP00000011284	Sema domain-containing protein.	Uncharacterized protein; Belongs to the semaphorin family.	0.601
ENSPMEP00000018443	SEMA4D	ENSPMEP00000018443	ENSPMEP00000007198	Sema domain-containing protein.	Uncharacterized protein; Belongs to the semaphorin family.	0.783
ENSPMEP00000018443	met	ENSPMEP00000018443	ENSPMEP00000013002	Sema domain-containing protein.	MET proto-oncogene, receptor tyrosine kinase.	0.839
ENSPMEP00000018443	nrp1	ENSPMEP00000018443	ENSPMEP00000011003	Sema domain-containing protein.	Neuropilin; Belongs to the neuropilin family.	0.777
ENSPMEP00000018443	sema3a	ENSPMEP00000018443	ENSPMEP00000021038	Sema domain-containing protein.	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Ab; Belongs to the semaphorin family.	0.600
ENSPMEP00000018443	sema3b	ENSPMEP00000018443	ENSPMEP00000033041	Sema domain-containing protein.	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B; Belongs to the semaphorin family.	0.600
ENSPMEP00000018443	sema3e	ENSPMEP00000018443	ENSPMEP00000000225	Sema domain-containing protein.	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E; Belongs to the semaphorin family.	0.593
ENSPMEP00000018443	sema7a	ENSPMEP00000018443	ENSPMEP00000020057	Sema domain-containing protein.	Semaphorin 7A; Belongs to the semaphorin family.	0.601
LOC106908941	ENSPMEP00000018443	ENSPMEP00000001936	ENSPMEP00000018443	Plexin C1.	Sema domain-containing protein.	0.784
LOC106908941	LOC106915081	ENSPMEP00000001936	ENSPMEP00000024361	Plexin C1.	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Aa; Belongs to the semaphorin family.	0.736
LOC106908941	LOC106920154	ENSPMEP00000001936	ENSPMEP00000011284	Plexin C1.	Uncharacterized protein; Belongs to the semaphorin family.	0.784
LOC106908941	SEMA4D	ENSPMEP00000001936	ENSPMEP00000007198	Plexin C1.	Uncharacterized protein; Belongs to the semaphorin family.	0.790
LOC106908941	met	ENSPMEP00000001936	ENSPMEP00000013002	Plexin C1.	MET proto-oncogene, receptor tyrosine kinase.	0.775
LOC106908941	nrp1	ENSPMEP00000001936	ENSPMEP00000011003	Plexin C1.	Neuropilin; Belongs to the neuropilin family.	0.873
LOC106908941	sema3a	ENSPMEP00000001936	ENSPMEP00000021038	Plexin C1.	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Ab; Belongs to the semaphorin family.	0.736
LOC106908941	sema3b	ENSPMEP00000001936	ENSPMEP00000033041	Plexin C1.	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B; Belongs to the semaphorin family.	0.751
LOC106908941	sema3e	ENSPMEP00000001936	ENSPMEP00000000225	Plexin C1.	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E; Belongs to the semaphorin family.	0.822
LOC106908941	sema7a	ENSPMEP00000001936	ENSPMEP00000020057	Plexin C1.	Semaphorin 7A; Belongs to the semaphorin family.	0.784