rpusd1 protein (Poecilia mexicana) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

rpusd1

RNA pseudouridine synthase domain containing 1. (303 aa)

Predicted Functional Partners:

pus7l

0.872

trub2

0.870

ndufab1

0.864

gtpbp3

0.836

malsu1

0.835

mrm3

0.821

mrpl3

0.805

gtpbp8

0.801

mrpl13

0.800

mrpl15

0.799

Your Current Organism:

Poecilia mexicana

NCBI taxonomy Id: 48701
Other names: shortfin molly

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
gtpbp3	gtpbp8	ENSPMEP00000029465	ENSPMEP00000033469	GTP binding protein 3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	EngB-type G domain-containing protein.	0.901
gtpbp3	malsu1	ENSPMEP00000029465	ENSPMEP00000000758	GTP binding protein 3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	Si:zfos-1192g2.3.	0.857
gtpbp3	mrm3	ENSPMEP00000029465	ENSPMEP00000019073	GTP binding protein 3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	Mitochondrial rRNA methyltransferase 3a.	0.869
gtpbp3	mrpl13	ENSPMEP00000029465	ENSPMEP00000001144	GTP binding protein 3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	Mitochondrial ribosomal protein L13.	0.859
gtpbp3	mrpl15	ENSPMEP00000029465	ENSPMEP00000015506	GTP binding protein 3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	Mitochondrial ribosomal protein L15.	0.844
gtpbp3	mrpl3	ENSPMEP00000029465	ENSPMEP00000001191	GTP binding protein 3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	Mitochondrial ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	0.836
gtpbp3	ndufab1	ENSPMEP00000029465	ENSPMEP00000022060	GTP binding protein 3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.782
gtpbp3	pus7l	ENSPMEP00000029465	ENSPMEP00000004252	GTP binding protein 3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	Pseudouridine synthase 7 like.	0.749
gtpbp3	rpusd1	ENSPMEP00000029465	ENSPMEP00000001938	GTP binding protein 3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	RNA pseudouridine synthase domain containing 1.	0.836
gtpbp3	trub2	ENSPMEP00000029465	ENSPMEP00000010915	GTP binding protein 3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	TruB pseudouridine (psi) synthase family member 2.	0.449
gtpbp8	gtpbp3	ENSPMEP00000033469	ENSPMEP00000029465	EngB-type G domain-containing protein.	GTP binding protein 3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	0.901
gtpbp8	malsu1	ENSPMEP00000033469	ENSPMEP00000000758	EngB-type G domain-containing protein.	Si:zfos-1192g2.3.	0.886
gtpbp8	mrm3	ENSPMEP00000033469	ENSPMEP00000019073	EngB-type G domain-containing protein.	Mitochondrial rRNA methyltransferase 3a.	0.869
gtpbp8	mrpl13	ENSPMEP00000033469	ENSPMEP00000001144	EngB-type G domain-containing protein.	Mitochondrial ribosomal protein L13.	0.867
gtpbp8	mrpl15	ENSPMEP00000033469	ENSPMEP00000015506	EngB-type G domain-containing protein.	Mitochondrial ribosomal protein L15.	0.858
gtpbp8	mrpl3	ENSPMEP00000033469	ENSPMEP00000001191	EngB-type G domain-containing protein.	Mitochondrial ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	0.858
gtpbp8	ndufab1	ENSPMEP00000033469	ENSPMEP00000022060	EngB-type G domain-containing protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.793
gtpbp8	pus7l	ENSPMEP00000033469	ENSPMEP00000004252	EngB-type G domain-containing protein.	Pseudouridine synthase 7 like.	0.751
gtpbp8	rpusd1	ENSPMEP00000033469	ENSPMEP00000001938	EngB-type G domain-containing protein.	RNA pseudouridine synthase domain containing 1.	0.801
malsu1	gtpbp3	ENSPMEP00000000758	ENSPMEP00000029465	Si:zfos-1192g2.3.	GTP binding protein 3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	0.857