Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
nhlh2Nescient helix loop helix 2. (124 aa)    
Predicted Functional Partners:
ENSPMEP00000001920
Uncharacterized protein.
    
 0.763
LOC106915819
Transcription factor 3b.
    
 0.763
TCF4
Transcription factor 4.
    
 0.763
LOC106923039
Transcription factor 3a.
    
 0.763
LOC106919343
BHLH domain-containing protein.
    
 0.763
tcf12
Transcription factor 12.
    
 0.763
gabpa
GA binding protein transcription factor subunit alpha.
    
 0.730
ENSPMEP00000027311
Inhibitor of DNA binding 1, HLH protein.
    
 0.701
gdap2
Ganglioside induced differentiation associated protein 2.
      
 0.680
gsc
Goosecoid.
    
 0.677
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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