STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106933673Rho GTPase activating protein 29b. (1382 aa)    
Predicted Functional Partners:
LOC106933042
Cell division cycle 42.
   
 0.610
CDC42
Cell division cycle 42.
   
 0.610
rasip1
Ras interacting protein 1.
    
 0.569
arhgap1
Uncharacterized protein.
     
0.563
LOC106919891
Uncharacterized protein.
   
 0.526
LOC106927935
Uncharacterized protein.
   
 0.526
ENSPMEP00000030824
Uncharacterized protein.
   
 0.526
LOC106931696
Uncharacterized protein.
    
 0.504
LOC106903887
Uncharacterized protein.
    
 0.504
RND1
Rho family GTPase 1.
    
 0.504
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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