LOC106914335 protein (Poecilia mexicana) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC106914335

Ubiquitinyl hydrolase 1. (783 aa)

Predicted Functional Partners:

LOC106923389

0.774

ercc1

0.722

rps27a

0.714

mysm1

0.636

LOC106914991

0.583

zfand4

0.529

ap4e1

0.527

otud6b

0.523

ENSPMEP00000001261

0.522

ENSPMEP00000015035

0.522

Your Current Organism:

Poecilia mexicana

NCBI taxonomy Id: 48701
Other names: shortfin molly

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPMEP00000001261	LOC106914335	ENSPMEP00000001261	ENSPMEP00000003166	Ubiquitin-like domain-containing protein.	Ubiquitinyl hydrolase 1.	0.522
ENSPMEP00000001261	ap4e1	ENSPMEP00000001261	ENSPMEP00000034509	Ubiquitin-like domain-containing protein.	AP-4 complex subunit epsilon; AP-4 forms a non clathrin-associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system; Belongs to the adaptor complexes large subunit family.	0.418
ENSPMEP00000001261	ercc1	ENSPMEP00000001261	ENSPMEP00000029898	Ubiquitin-like domain-containing protein.	Excision repair cross-complementation group 1.	0.577
ENSPMEP00000001261	mysm1	ENSPMEP00000001261	ENSPMEP00000001574	Ubiquitin-like domain-containing protein.	Myb-like, SWIRM and MPN domains 1.	0.998
ENSPMEP00000001261	rps27a	ENSPMEP00000001261	ENSPMEP00000029582	Ubiquitin-like domain-containing protein.	Ribosomal protein S27a.	0.904
ENSPMEP00000001261	zfand4	ENSPMEP00000001261	ENSPMEP00000023315	Ubiquitin-like domain-containing protein.	Zinc finger, AN1-type domain 4.	0.445
ENSPMEP00000015035	LOC106914335	ENSPMEP00000015035	ENSPMEP00000003166	Ubiquitin-like domain-containing protein.	Ubiquitinyl hydrolase 1.	0.522
ENSPMEP00000015035	ap4e1	ENSPMEP00000015035	ENSPMEP00000034509	Ubiquitin-like domain-containing protein.	AP-4 complex subunit epsilon; AP-4 forms a non clathrin-associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system; Belongs to the adaptor complexes large subunit family.	0.418
ENSPMEP00000015035	ercc1	ENSPMEP00000015035	ENSPMEP00000029898	Ubiquitin-like domain-containing protein.	Excision repair cross-complementation group 1.	0.577
ENSPMEP00000015035	mysm1	ENSPMEP00000015035	ENSPMEP00000001574	Ubiquitin-like domain-containing protein.	Myb-like, SWIRM and MPN domains 1.	0.998
ENSPMEP00000015035	rps27a	ENSPMEP00000015035	ENSPMEP00000029582	Ubiquitin-like domain-containing protein.	Ribosomal protein S27a.	0.905
ENSPMEP00000015035	zfand4	ENSPMEP00000015035	ENSPMEP00000023315	Ubiquitin-like domain-containing protein.	Zinc finger, AN1-type domain 4.	0.445
LOC106914335	ENSPMEP00000001261	ENSPMEP00000003166	ENSPMEP00000001261	Ubiquitinyl hydrolase 1.	Ubiquitin-like domain-containing protein.	0.522
LOC106914335	ENSPMEP00000015035	ENSPMEP00000003166	ENSPMEP00000015035	Ubiquitinyl hydrolase 1.	Ubiquitin-like domain-containing protein.	0.522
LOC106914335	LOC106914991	ENSPMEP00000003166	ENSPMEP00000007603	Ubiquitinyl hydrolase 1.	Ubiquitin like 4A.	0.583
LOC106914335	LOC106923389	ENSPMEP00000003166	ENSPMEP00000014676	Ubiquitinyl hydrolase 1.	Ubiquitin-like domain-containing protein.	0.774
LOC106914335	ap4e1	ENSPMEP00000003166	ENSPMEP00000034509	Ubiquitinyl hydrolase 1.	AP-4 complex subunit epsilon; AP-4 forms a non clathrin-associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system; Belongs to the adaptor complexes large subunit family.	0.527
LOC106914335	ercc1	ENSPMEP00000003166	ENSPMEP00000029898	Ubiquitinyl hydrolase 1.	Excision repair cross-complementation group 1.	0.722
LOC106914335	mysm1	ENSPMEP00000003166	ENSPMEP00000001574	Ubiquitinyl hydrolase 1.	Myb-like, SWIRM and MPN domains 1.	0.636
LOC106914335	otud6b	ENSPMEP00000003166	ENSPMEP00000005811	Ubiquitinyl hydrolase 1.	OTU domain containing 6B.	0.523