STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106905297PPP1R35_C domain-containing protein. (284 aa)    
Predicted Functional Partners:
bahd1
Bromo adjacent homology domain containing 1.
      
 0.602
pdxdc1
Pyridoxal-dependent decarboxylase domain containing 1.
      
 0.602
rttn
Rotatin.
      
 0.576
tatdn2
TatD DNase domain containing 2.
      
 0.564
LOC106922589
STIL centriolar assembly protein.
      
 0.540
fndc3b
Fibronectin type III domain containing 3Ba.
      
 0.503
LOC106922123
BAH domain-containing protein.
      
 0.483
ccdc9
Coiled-coil domain containing 9.
      
 0.473
arl13b
ADP-ribosylation factor-like 13b.
      
 0.461
chmp2a
Charged multivesicular body protein 2A.
      
 0.426
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.