STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106927593Ring finger protein 38. (729 aa)    
Predicted Functional Partners:
rps27a
Ribosomal protein S27a.
    
 0.912
LOC106923389
Ubiquitin-like domain-containing protein.
    
 0.908
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.786
ENSPMEP00000030828
Ubiquitin-like domain-containing protein.
    
 0.786
ube2k
Ubiquitin-conjugating enzyme E2Kb (UBC1 homolog, yeast); Belongs to the ubiquitin-conjugating enzyme family.
    
 0.681
LOC106920305
Ubiquitin conjugating enzyme E2 K; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.681
trip12
Thyroid hormone receptor interactor 12.
   
 
 0.649
LOC106924782
Mothers against decapentaplegic homolog.
   
 0.645
smad7
Mothers against decapentaplegic homolog.
   
 0.645
smad6
Mothers against decapentaplegic homolog.
   
 0.645
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.