STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nudt22Nudix (nucleoside diphosphate linked moiety X)-type motif 22. (332 aa)    
Predicted Functional Partners:
trpt1
tRNA phosphotransferase 1.
 
 
  
 0.685
ndufb7
NADH:ubiquinone oxidoreductase subunit B7.
   
    0.658
bckdk
Protein-serine/threonine kinase.
   
  
 0.602
nudt12
Nudix (nucleoside diphosphate linked moiety X)-type motif 12.
    
 
 0.575
trabd
TraB domain containing.
      
 0.572
nudt5
Nudix (nucleoside diphosphate linked moiety X)-type motif 5.
      
 0.568
NDUFA13
NADH:ubiquinone oxidoreductase subunit A13.
   
    0.563
wdyhv1
WDYHV motif containing 1.
      
 0.561
nudt1
Nudix (nucleoside diphosphate linked moiety X)-type motif 1; Belongs to the Nudix hydrolase family.
   
  
 0.549
nudt21
Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...]
      
 0.547
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.