STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106908186Uncharacterized protein. (433 aa)    
Predicted Functional Partners:
ctnnb1
Catenin (cadherin-associated protein), beta 1.
   
 0.966
LOC106921026
Uncharacterized protein.
   
 0.962
LOC106915155
Vinculin a.
    
0.957
vcl
Vinculin b.
    
0.957
ACTN4
Actinin alpha 4.
   
 0.931
actn1
Actinin, alpha 1.
   
 0.931
ENSPMEP00000018140
Uncharacterized protein.
 
     0.927
ENSPMEP00000023310
annotation not available
 
     0.927
LOC106906403
Tight junction protein 1a; Belongs to the MAGUK family.
   
 0.925
tjp1
Tight junction protein 1b; Belongs to the MAGUK family.
   
 0.925
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.