STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
atg16l1ATG16 autophagy related 16-like 1 (S. cerevisiae). (605 aa)    
Predicted Functional Partners:
atg12
Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.
    
 0.997
atg5
Autophagy protein 5; Involved in autophagic vesicle formation.
   
 0.995
wipi2
WD repeat domain, phosphoinositide interacting 2.
   
 0.993
atg3
Autophagy-related protein 3.
   
 0.991
rb1cc1
RB1-inducible coiled-coil 1.
   
 0.991
LOC106911658
RAB33B, member RAS oncogene family a.
    
 0.989
LOC106927668
Zgc:101559.
    
 0.986
WIPI1
WD repeat domain, phosphoinositide interacting 1.
   
 0.983
LOC106905796
WD repeat domain, phosphoinositide interacting 1.
   
 0.983
gabarap
GABA(A) receptor-associated protein b.
    
 0.977
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.