Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ccdc47Coiled-coil domain containing 47. (489 aa)    
Predicted Functional Partners:
tmco1
Calcium load-activated calcium channel; Calcium-selective channel required to prevent calcium stores from overfilling.
    
 
 0.970
tmem147
Transmembrane protein 147.
   
 
 0.962
ncln
Nicalin.
    
 
 0.959
wdr83os
WD repeat domain 83 opposite strand.
    
 
 0.949
sec61b
Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.
    
 
 0.931
rpl8
Ribosomal protein L8.
   
 
 0.901
rpl6
Ribosomal protein L6.
   
 
 0.897
LOC106917478
Translocating chain-associated membrane protein; Belongs to the TRAM family.
    
 
 0.895
LOC106923220
Plug_translocon domain-containing protein.
   
 
 0.894
LOC106929789
Plug_translocon domain-containing protein.
   
 
 0.894
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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