STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
higd1aHIG1 hypoxia inducible domain family member 1A. (93 aa)    
Predicted Functional Partners:
LOC106929613
Uncharacterized protein.
   
 
 0.906
LOC106906566
Cytochrome c oxidase subunit 6A1.
   
 
 0.906
LOC106923282
Si:ch73-111k22.2.
   
 
 0.814
LOC106921256
Cytochrome c oxidase subunit 5B2.
   
 
 0.814
LOC106922504
Uncharacterized protein.
   
 
 0.814
COX5B
Cytochrome c oxidase subunit 5B.
   
 
 0.814
LOC106911283
Heme-binding protein soul4.
    
 
 0.812
LOC106933601
Ubiquinol-cytochrome c reductase core protein 1.
   
 
 0.806
pmpcb
Peptidase (mitochondrial processing) beta; Belongs to the peptidase M16 family.
   
 
 0.806
LOC106919459
Cytochrome c oxidase subunit; This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.
   
 
 0.666
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.