STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106923672Myomesin 1a (skelemin). (1465 aa)    
Predicted Functional Partners:
ENSPMEP00000027878
Rhomboid-related protein 3; May be involved in regulated intramembrane proteolysis and the subsequent release of functional polypeptides from their membrane anchors; Belongs to the peptidase S54 family.
    
  0.595
wdr18
WD repeat domain 18.
   
 0.546
pes1
Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 0.528
tex10
Testis expressed 10.
    
 0.522
LOC106925217
Receptor-interacting serine-threonine kinase 3; Belongs to the protein kinase superfamily.
   
  0.473
ripk4
Receptor-interacting serine-threonine kinase 4.
   
  0.473
myl1
Myosin, light chain 1, alkali; skeletal, fast.
   
 0.455
rpl30
Ribosomal protein L30.
    
  0.452
cenpn
Centromere protein N.
    
  0.448
cenpm
Proliferation associated nuclear element.
    
  0.447
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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