STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
calb2Calbindin 2b. (271 aa)    
Predicted Functional Partners:
LOC106926452
Calcium/calmodulin-dependent serine protein kinase b; Belongs to the MAGUK family.
    
 0.797
CASK
Calcium/calmodulin dependent serine protein kinase; Belongs to the MAGUK family.
    
 0.797
myo3b
Myosin IIIB; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
   
 0.713
LOC106920786
Protein kinase domain-containing protein.
   
 0.713
LOC106923960
Myosin IIIA; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
   
 0.713
wdr90
WD repeat domain 90.
   
 0.646
tk2
Thymidine kinase 2.
    
  0.642
dclk1
Doublecortin-like kinase 1a.
   
 0.613
LOC106910510
Doublecortin-like kinase 1b.
   
 0.613
nudt12
Nudix (nucleoside diphosphate linked moiety X)-type motif 12.
   
  0.611
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.