ENSPMEP00000005698 protein (Poecilia mexicana)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSPMEP00000005698

Uncharacterized protein. (437 aa)

Predicted Functional Partners:

spi1

0.728

myb

0.706

ENSPMEP00000002928

0.666

LOC106925673

0.666

ENSPMEP00000003502

0.659

LOC106911578

0.659

srf

0.636

LOC106931781

0.636

BDKRB2

0.591

LOC106927107

0.590

Your Current Organism:

Poecilia mexicana

NCBI taxonomy Id: 48701
Other names: shortfin molly

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BDKRB2	ENSPMEP00000005698	ENSPMEP00000008364	ENSPMEP00000005698	Bradykinin receptor B2; Belongs to the G-protein coupled receptor 1 family.	Uncharacterized protein.	0.591
ENSPMEP00000002928	ENSPMEP00000003502	ENSPMEP00000002928	ENSPMEP00000003502	BHLH domain-containing protein.	RunxI domain-containing protein.	0.796
ENSPMEP00000002928	ENSPMEP00000005698	ENSPMEP00000002928	ENSPMEP00000005698	BHLH domain-containing protein.	Uncharacterized protein.	0.666
ENSPMEP00000002928	LOC106911578	ENSPMEP00000002928	ENSPMEP00000020594	BHLH domain-containing protein.	Runt domain-containing protein.	0.796
ENSPMEP00000002928	LOC106927107	ENSPMEP00000002928	ENSPMEP00000002723	BHLH domain-containing protein.	Runt-related transcription factor.	0.747
ENSPMEP00000002928	myb	ENSPMEP00000002928	ENSPMEP00000021002	BHLH domain-containing protein.	V-myb avian myeloblastosis viral oncogene homolog.	0.758
ENSPMEP00000002928	spi1	ENSPMEP00000002928	ENSPMEP00000026949	BHLH domain-containing protein.	Spi-1 proto-oncogene b.	0.769
ENSPMEP00000003502	ENSPMEP00000002928	ENSPMEP00000003502	ENSPMEP00000002928	RunxI domain-containing protein.	BHLH domain-containing protein.	0.796
ENSPMEP00000003502	ENSPMEP00000005698	ENSPMEP00000003502	ENSPMEP00000005698	RunxI domain-containing protein.	Uncharacterized protein.	0.659
ENSPMEP00000003502	LOC106925673	ENSPMEP00000003502	ENSPMEP00000025575	RunxI domain-containing protein.	T-cell acute lymphocytic leukemia 1.	0.796
ENSPMEP00000003502	myb	ENSPMEP00000003502	ENSPMEP00000021002	RunxI domain-containing protein.	V-myb avian myeloblastosis viral oncogene homolog.	0.714
ENSPMEP00000003502	spi1	ENSPMEP00000003502	ENSPMEP00000026949	RunxI domain-containing protein.	Spi-1 proto-oncogene b.	0.833
ENSPMEP00000005698	BDKRB2	ENSPMEP00000005698	ENSPMEP00000008364	Uncharacterized protein.	Bradykinin receptor B2; Belongs to the G-protein coupled receptor 1 family.	0.591
ENSPMEP00000005698	ENSPMEP00000002928	ENSPMEP00000005698	ENSPMEP00000002928	Uncharacterized protein.	BHLH domain-containing protein.	0.666
ENSPMEP00000005698	ENSPMEP00000003502	ENSPMEP00000005698	ENSPMEP00000003502	Uncharacterized protein.	RunxI domain-containing protein.	0.659
ENSPMEP00000005698	LOC106911578	ENSPMEP00000005698	ENSPMEP00000020594	Uncharacterized protein.	Runt domain-containing protein.	0.659
ENSPMEP00000005698	LOC106925673	ENSPMEP00000005698	ENSPMEP00000025575	Uncharacterized protein.	T-cell acute lymphocytic leukemia 1.	0.666
ENSPMEP00000005698	LOC106927107	ENSPMEP00000005698	ENSPMEP00000002723	Uncharacterized protein.	Runt-related transcription factor.	0.590
ENSPMEP00000005698	LOC106931781	ENSPMEP00000005698	ENSPMEP00000031530	Uncharacterized protein.	MADS-box domain-containing protein.	0.636
ENSPMEP00000005698	myb	ENSPMEP00000005698	ENSPMEP00000021002	Uncharacterized protein.	V-myb avian myeloblastosis viral oncogene homolog.	0.706