Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
POU3F4POU domain protein. (363 aa)    
Predicted Functional Partners:
LOC106912166
Si:ch211-213d14.1.
    
 
 0.619
snapc4
Uncharacterized protein.
    
  0.587
snapc3
Small nuclear RNA activating complex, polypeptide 3.
    
  0.582
ENSPMEP00000017107
Uncharacterized protein.
    
  0.571
LOC106927974
Uncharacterized protein.
    
  0.571
NPAS3
Neuronal PAS domain protein 3.
    
 0.561
ENSPMEP00000010628
BHLH domain-containing protein.
    
 0.561
ENSPMEP00000028678
Neuronal PAS domain protein 1.
    
 0.561
LOC106914826
POU domain protein.
   
 
 0.527
pou4f2
POU domain protein.
   
 
 0.527
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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