STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nr1d1Nuclear receptor subfamily 1, group d, member 1. (574 aa)    
Predicted Functional Partners:
LOC106919386
Nuclear receptor corepressor 1.
    
 0.880
ncor2
Nuclear receptor corepressor 2.
    
 0.880
ENSPMEP00000030787
GPS2_interact domain-containing protein.
    
 0.880
LOC106926977
Selenoprotein J.
    
 0.848
LOC106927396
Uncharacterized protein.
    
 0.848
HDAC3
Histone deacetylase 3; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4), and some other non-histone substrates. Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.
    
 0.756
LOC106929674
D site albumin promoter binding protein b.
   
 
 0.680
per1
Period circadian clock 1b.
   
 
 0.639
LOC106918171
Circadian associated repressor of transcription a.
   
  
 0.618
bhlhe41
Basic helix-loop-helix family, member e41.
   
  
 0.608
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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