STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
barhl2BarH-like homeobox 2. (367 aa)    
Predicted Functional Partners:
LOC106931121
LIM homeobox 5.
   
 
 0.661
LOC106912913
Iroquois homeobox 7.
    
 
 0.639
C1orf146
Chromosome 1 open reading frame 146.
      
 0.575
foxn4
Forkhead box N4.
   
 0.559
LOC106916178
BAF chromatin remodeling complex subunit BCL11A.
   
 
 0.550
ZNF503
Zinc finger protein 503.
   
  
 0.532
bhlhe22
Basic helix-loop-helix family, member e22.
   
  
 0.509
znf503
Zinc finger protein 503.
      
 0.502
lhx1
LIM homeobox 1a.
   
 
 0.468
ISL2
ISL LIM homeobox 2b.
   
 
 0.447
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.