STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wdr19WD repeat domain 19. (1324 aa)    
Predicted Functional Partners:
IFT122
Intraflagellar transport 122.
   
 0.999
ift140
Intraflagellar transport 140 homolog (Chlamydomonas).
    
0.998
IFT43
Intraflagellar transport 43.
    
 0.987
ttc21b
Tetratricopeptide repeat domain 21B.
   
 0.984
LOC106929499
WD repeat-containing protein 35.
   
 0.980
LOC106921222
WD repeat-containing protein 35-like.
   
 0.980
ift80
Intraflagellar transport 80 homolog (Chlamydomonas).
   
 0.926
cluap1
Clusterin associated protein 1.
  
  
 0.855
ift88
Intraflagellar transport 88 homolog.
   
 
 0.855
ttc26
Tetratricopeptide repeat domain 26.
   
 
 0.848
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.