STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106931526IF rod domain-containing protein; Belongs to the intermediate filament family. (395 aa)    
Predicted Functional Partners:
ENSPMEP00000016872
Uncharacterized protein.
    
 0.854
ranbp2
RAN binding protein 2.
   
 0.671
LOC106914393
Keratin 4; Belongs to the intermediate filament family.
  
0.592
ENSPMEP00000012258
Uncharacterized protein.
    
  0.589
ENSPMEP00000028971
Uncharacterized protein.
    
  0.589
LOC106916117
Uncharacterized protein.
   
  0.577
ENSPMEP00000014077
Uncharacterized protein.
    
 0.577
RIMS2
Regulating synaptic membrane exocytosis 2.
   
  0.577
LOC106933060
Lysine (K)-specific demethylase 6B, a.
   
 0.576
rbbp5
Retinoblastoma binding protein 5.
    
 0.574
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.