Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
rab3cRAB3C, member RAS oncogene family. (225 aa)    
Predicted Functional Partners:
LOC106916117
Uncharacterized protein.
    
 0.953
RIMS2
Regulating synaptic membrane exocytosis 2.
    
 0.953
LOC106918553
Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.
    
 0.804
rabif
RAB interacting factor.
    
 
 0.785
LOC106918287
Synaptotagmin IIa.
   
 0.707
LOC106911034
Uncharacterized protein.
   
 0.707
syt1
Synaptotagmin Ia.
   
 0.707
LOC106910828
Uncharacterized protein.
   
 0.707
LOC106915446
Synaptotagmin Ib.
   
 0.702
madd
MAP-kinase activating death domain.
    
 0.701
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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