STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106919489PDZ domain containing 3b. (473 aa)    
Predicted Functional Partners:
ift57
Intraflagellar transport 57 homolog (Chlamydomonas).
    
 0.661
LOC106903858
Uncharacterized protein.
    
0.653
LOC106905344
Membrane associated guanylate kinase, WW and PDZ domain containing 3b.
    
0.653
traf3ip1
TNF receptor-associated factor 3 interacting protein 1.
    
 0.649
ift80
Intraflagellar transport 80 homolog (Chlamydomonas).
    
 0.640
ift172
Intraflagellar transport 172.
    
 0.637
LOC106913124
Uncharacterized protein.
    
  0.636
prkcz
Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.
    
 0.592
prkci
Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.
    
 0.592
ift88
Intraflagellar transport 88 homolog.
    
 0.590
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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