STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPMEP00000012371Calponin-homology (CH) domain-containing protein. (207 aa)    
Predicted Functional Partners:
mst1r
Macrophage stimulating 1 receptor b.
    
  0.593
met
MET proto-oncogene, receptor tyrosine kinase.
    
  0.593
LOC106916334
Macrophage stimulating 1 receptor a.
    
  0.593
NCSTN
Nicastrin.
    
 0.566
arid4a
AT rich interactive domain 4A (RBP1-like).
    
 0.544
arid4b
Translocase of outer mitochondrial membrane 20.
    
 0.544
LOC106919996
Transforming growth factor beta; Belongs to the TGF-beta family.
   
  0.544
slf1
SMC5-SMC6 complex localization factor 1.
   
 0.542
PTK7
Protein tyrosine kinase 7 (inactive); Belongs to the protein kinase superfamily. Tyr protein kinase family.
    
  0.534
fras1
Fraser extracellular matrix complex subunit 1.
   
 0.523
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.