STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tnfaip6Tumor necrosis factor, alpha-induced protein 6. (268 aa)    
Predicted Functional Partners:
LOC106904819
Interleukin-8; Belongs to the intercrine alpha (chemokine CxC) family.
   
 
 0.865
LOC106907688
Interleukin-1.
   
 0.812
ptx3
Pentraxin 3, long b.
   
 
 0.800
LOC106927207
Link domain-containing protein.
     
 0.678
LOC106929223
Link domain-containing protein.
     
 0.678
tnfsf11
TNF superfamily member 11; Belongs to the tumor necrosis factor family.
    
 0.676
habp2
Uncharacterized protein.
    
 0.665
col22a1
Collagen, type XXII, alpha 1.
    
 0.663
hgfac
HGF activator.
    
 0.646
ENSPMEP00000010696
RHD domain-containing protein.
    
 0.628
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.