STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pou1f1POU domain protein. (314 aa)    
Predicted Functional Partners:
snapc4
Uncharacterized protein.
    
  0.708
LOC106915779
CREB binding protein b.
    
 0.649
LOC106933952
CREB binding protein a.
    
 0.649
gtf2b
General transcription factor IIB.
    
  0.637
gtf2e1
General transcription factor IIE, polypeptide 1, alpha.
    
  0.626
pou2af1
Uncharacterized protein.
    
 
 0.624
snapc3
Small nuclear RNA activating complex, polypeptide 3.
   
 
  0.607
LOC106930411
Homeobox domain-containing protein.
    
 
 0.604
pcf11
PCF11 cleavage and polyadenylation factor subunit.
     
 0.603
polr3k
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
     
 0.600
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.