STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tmem53Transmembrane protein 53. (286 aa)    
Predicted Functional Partners:
lrrc4
Leucine rich repeat containing 4.1.
      
 0.602
rbm28
RNA binding motif protein 28.
      
 0.580
LOC106904916
Leucine rich repeat containing 4.2.
      
 0.579
LOC106918882
Si:dkey-31f5.11.
      
 0.564
tmem223
Transmembrane protein 223.
      
 0.558
tmem147
Transmembrane protein 147.
      
 0.533
nme7
Nucleoside diphosphate kinase 7; Belongs to the NDK family.
      
 0.522
dmap1
DNA methyltransferase 1 associated protein 1.
      
 0.516
sh3yl1
SH3 and SYLF domain containing 1.
      
 0.499
prrt4
Uncharacterized protein.
      
 0.491
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.